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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G141200.3 | ||||||||
Common Name | PHAVU_005G141200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 19717.8 Da PI: 4.9488 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Phvul.005G141200.3 2 TPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTLM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.7E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.915 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 1.61E-12 | 1 | 43 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-12 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MTPQEERLVL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR TLMRKKAQDK KRGEAASFTP 60 TPSSSVHSSI SVSSKKHAVE PHGSKKAGEE SFYDTGGPSV IGSSQDEGEG EFSMDDIWKD 120 IDMSEENNSF LHGNGEVVSP SPSSWEYCSC EPLWVMDEES LFCPMSEPYF YALSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-93 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150290.1 | 1e-128 | hypothetical protein PHAVU_005G141200g | ||||
Swissprot | Q9LX82 | 3e-39 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | V7BWG7 | 1e-128 | V7BWG7_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA15G04620.1 | 5e-76 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 7e-41 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G141200.3 |
Entrez Gene | 18631055 |